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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST003790
species: Oryza sativa
miRNA family: MIR1431
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGCGAGTTGGCCCGCTTGC

miRNA*
 AAGCGGGTCAACCCGTGAACC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCAC
TTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATC
CCTAGATGCCGTCTTA

dot-bracket secondary structure
.......(((((((((((.(((((((((((((((.((((((((.(((((((...(((((.(((.((((((((((........(((..(((.(((((((((
(((......)))))).))....)))).))).)))..........))))))))))))).)))))...))))))).)))))))).))))))))))))))).)
))))).....))))).


SIMILARITIES
miRBase osa-MIR1431: 7e-121

PMRD osa-miR1431: 7e-121

microPC miR1431: 1e-97		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1431 from microPC (MNEST045558)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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